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Upcoming Book Explores Nanomedical Device and Systems Design

Posted by Jim Lewis on November 21st, 2013

Nanomedical Device and Systems Design: Challenges, Possibilities, Visions Published: November 18, 2013 by CRC Press Content:787 Pages | 223 Illustrations Editor(s):Frank Boehm

Aubrey de Grey (Chairman and Chief Science Officer of the Methuselah Foundation and Editor-in-Chief of the high-impact journal Rejuvenation Research) offers some affirmative comments below, subsequent to a review of the upcoming book: Nanomedical Device and Systems Design: Challenges, Possibilities, Visions (CRC Press/Taylor & Francis)
edited by Frank J. Boehm, which is slated for release on November 25, 2013.

“This book is extraordinarily detailed and comprehensive, and succeeds splendidly as an update to a field previously defined by Freitas’s similarly encyclopedic works. A particularly strong element is the thorough dissection of methods of nanodevice delivery covered in the first section. I am most impressed by the book’s structure. One particularly nice decision was to open up the central section to invited authors, giving the book a level of variety that is otherwise challenging to deliver. The level of detail presented is the main thing I am looking for in such highly speculative engineering design surveys, and it is fantastic here.”

“Robert Freitas defined the field of nanomedicine with his encyclopedic analysis published at the turn of the century. After 15 years, the time is right to provide an updated view, but can Freitas’s comprehensiveness ever be matched? Boehm has shown that it can. As Freitas did, he has risen to the formidable challenge of tackling a hugely speculative area of pioneering technology with a level of thoroughness that should give even the cautious reader a substantial level of confidence that, once the most basic nuts and bolts of molecular manufacturing are available (and progress towards them is already encouraging), their application to some of our greatest needs may rapidly follow.”

Upon his review of the book, Ted Kucklick, author of The Medical Device R&D Handbook, notes that “Nanomedical Device and Systems Design: Challenges, Possibilities, Visions speculates where nanotechnology for medicine might develop in the next 10-20 years, and postulates a number of possibilities for therapeutic applications including artificial blood and neuroprosthetics and posthuman augmentation. Medical futurists may find this book useful in anticipating where these technologies may lead.”

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Dr. Banning Garrett discusses the importance of Nanotechnology in world markets.

Posted by candice on November 20th, 2013

Dr. Garrett gives 2014 Foresight Technical Conference: Integration a picture of the global socio-political piece of the nanotechnology puzzle.  He can provide insight into why nanotechnology is important strategically as part of the new industrial revolution and the accelerating pace of technologically-induced disruptive change throughout society and geopolitics.

Dr. Banning Garrett is Strategic Foresight Senior Fellow for Innovation and Global Trends and founding director of the Strategic Foresight Initiative at the Atlantic Council of the United States. He also established and has directed since 2006, the Council’s collaboration with the  National Intelligence Council in preparation of their quadrennial long-term assessments of global trends, most recently Global Trends 2030: Alternative Worlds, released in 2012.  For 22 years Dr. Garrett worked as a consultant to the Department of Defense and US government agencies conducting an unofficial strategic dialogue with China beginning in 1981. Dr. Garrett was also a senior associate at the Center for Strategic and International Studies and a founding board member of the US Committee for Security Cooperation in the Asia Pacific.

You can hear more from Dr. Garrett at the 2014 Foresight Technical Conference: Integration

Early Registration ends 11/25 for the 2014 Foresight Technical Conference: Integration —February 7-9, 2014

Use discount code NANOBLOG for $100 off during Early Registration

Early registration rates and reduced hotel rates are available for a limited time.

Graphene nanoribbon senses passage of individual bases of DNA

Posted by Jim Lewis on November 19th, 2013

Caption: Many efforts over last decade have been directed towards development of single molecule sequencing based on solid state nanopores. Aleksandra Radenovic and co-workers have made a device composed of a graphene nanoribbon transistor built on top of a solid state nanopore. Direct electrical readout from the graphene transistors is used to detect DNA translocation events. Nanopore, DNA and the graphene nanoribbon are shown in this schematic (which is not to scale). Credit: EPFL

A major contribution of current and near-term nanotechnology to medical advance will be improving DNA sequencing technology to enable fully individualized medical treatment. In an important step toward very rapid DNA sequencing, researchers have used a graphene nanoribbon transistor to sense the movement of a DNA molecule through a nanopore. A hat tip to ScienceDaily for reprinting this public release from the Ecole Polytechnique Fédérale de Lausanne in Switzerland: “Graphene nanoribbons for ‘reading’ DNA“.

… The DNA molecules are diluted in a solution containing ions and are driven by an electric field through a membrane with a nanopore. When the molecule goes through the orifice, it provokes a slight perturbation to the field, detectable not only by the modulations in ionic current but also by concomitant modulation in the graphene transistor current. Based on this information, it is possible to determine whether a DNA molecule has passed through the membrane or not.

This system is based on a method that has been known for over a dozen years. The original technique was not as reliable since it presented a number of shortcomings such as clogging pores and lack of precision, among others. “We thought that we would be able to solve these problems by creating a membrane as thin as possible while maintaining the orifice’s strength”, said Aleksandra Radenovic from the Laboratory of Nanoscale Biology at EPFL. Together with Floriano Traversi, postdoctoral student, and colleagues from the Laboratory of Nanoscale Electronics and Structures, she came across the material that turned out to be both the strongest and most resilient: graphene, which consists of a single layer of carbon molecules. The strips of graphene or nanoribbons used in the experiment were produced at EPFL, thanks to the work carried out at the Center for Micro Nanotechnology (CMI) and the Center for Electron Microscopy (CIME).

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Nanoparticle therapy for incurable brain cancer effective in mice

Posted by Jim Lewis on November 15th, 2013

Researchers combined gold nanoparticles (in yellow) with small interfering RNAs (in green) to knock down an oncogene that is overexpressed in glioblastoma. Credit: Northwestern University

Back in 2009 we cited promising work from Chad Mirkin (winner of the 2002 Foresight Institute Feynman Prize in Nanotechnology in the Experimental category) that covering 13-nanometer gold nanoparticles with siRNA molecules enable the usually unstable and fragile molecules to enter tumor cells in culture and silence the tumor cell gene against which the siRNA molecules were targeted. We now learn that these spherical nucleic acid nanoparticle conjugates show activity in cell culture and in mouse models against an incurable brain cancer called glioblastoma multiforme (GBM). A hat tip to ScienceDaily for reprinting this Northwestern University news release by Megan Fellman “Incurable Brain Cancer Gene Is Silenced: Gene regulation technology increases survival rates in mice with glioblastoma“:

Glioblastoma multiforme (GBM), the brain cancer that killed Sen. Edward Kennedy and kills approximately 13,000 Americans a year, is aggressive and incurable. Now a Northwestern University research team is the first to demonstrate delivery of a drug that turns off a critical gene in this complex cancer, increasing survival rates significantly in animals with the deadly disease.

The novel therapeutic, which is based on nanotechnology, is small and nimble enough to cross the blood-brain barrier and get to where it is needed — the brain tumor. Designed to target a specific cancer-causing gene in cells, the drug simply flips the switch of the troublesome oncogene to “off,” silencing the gene. This knocks out the proteins that keep cancer cells immortal.

In a study of mice, the nontoxic drug was delivered by intravenous injection. In animals with GBM, the survival rate increased nearly 20 percent, and tumor size was reduced three to four fold, as compared to the control group. The results are published today (Oct. 30) in Science Translational Medicine [abstract].

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2014 Foresight Technical Conference: Integration

Posted by candice on November 14th, 2013

2014 Foresight Technical Conference: Integration
February 7 – 9, 2014
Crowne Plaza Hotel, Palo Alto, California, USA

DEADLINE for early registration: Nov. 20
For $100 discount, use code NANOBLOG

Paolo Gargini, ITRS Chairman, former Intel VP of Technology Strategy

Conference Co-Chairs:
Robert P. Meagley, CEO/CTO, One Nanotechnologies
William A. Goddard III, Director, Materials and Process Simulation Center, Caltech

•  Strategy, Analysis and Simulation
•  Bionano Systems
•  Commercially Implemented Nanotechnology
•  Electronic and Optical Nanosystems
•  Self-Organizing & Adaptive Systems

To be successful, today’s groundbreaking atomic- and molecular-scale science and engineering must be integrated into more complex micro- and macro-systems. Nanoengineered devices and materials are being targeted at a wide range of uses throughout biotechnology, medicine, electronics, defense, energy conversion and storage, coatings, textiles, pharmaceuticals, cosmetics, and food & food security.

Increasing momentum in this process will drive further progress toward advanced nanotechnologies.  Therefore, this year’s Foresight Conference focuses on Integration, and co-chairs Robert Meagley and William Goddard have been curating an exceptional line-up of speakers.

We are especially excited that Dr. Paolo Gargini has agreed to be our Keynote speaker. Dr. Gargini is the former VP of Technology Strategy at Intel and is currently the Chairman of ITRS, the International Technology Roadmap for Semiconductors. He will share with us his unique perspective of applied and emerging nanotech, especially on how the semiconductor industry has been driving to atomic precision and spinning off materials and technologies discovered along the way.
Additional speakers include:
  • Cliff Henderson, Functional Organic Materials, Georgia Tech
  • Philip Wong, Stanford Nanoelectronics Lab
  • Steven Roscoe, 3M Central Research
  • Ron Zuckermann, Molecular Foundry, Lawrence Berkeley National Lab
  • Reza Arghavani, LAM Research
  • Banning Garrett, Atlantic Council
  • Boris Kobrin, Rolith Inc.
  • Mark Akeson, Biomolecular Engineering, UC Santa Cruz
The conference will include the Feynman Prize Luncheon on Saturday. In addition there will be offsite no-host, topic-based discussion groups for Sunday lunch.

We have reserved a special $100 discount for those who register early. This discount applies during early registration ending November 20, which is coming up fast. To take advantage of this discount when you register for the conference, use promotional code NANOBLOG.

We look forward to discussion the integration of Nanotechnology with you in February!

Best Regards,

Paul Melnyk, President

Christine Peterson, Co-Founder

Adding more chemical interactions to DNA nanotechnology

Posted by Jim Lewis on October 24th, 2013

A DNA cage (at left), with lipid-like molecules (in blue). The lipids come together in a 'handshake' within the cage (center image) to encapsulate small-molecule drugs (purple). The molecules are released (at right) in response to the presence of a specific nucleic acid. Credit: Thomas Edwardson, McGill University

Many different types of nanoparticles have been proposed as improved drug delivery vehicles for nanomedical use, ranging from nanoscale lipid vesicles to atomically precise nucleic acid nanostructures. Together they provide various approaches to solving the many challenges involved in efficiently transporting a drug to the right target. Researchers at McGill University have now modified DNA strands with lipid-like molecules to better hold a cargo of drug molecules. A hat tip to Newswise for reprinting this McGill University news release “DNA ‘cages’ may aid drug delivery“:

Nanoscale “cages” made from strands of DNA can encapsulate small-molecule drugs and release them in response to a specific stimulus, McGill University researchers report in a new study.

The research, published online Sept. 1 in Nature Chemistry [abstract], marks a step toward the use of biological nanostructures to deliver drugs to diseased cells in patients. The findings could also open up new possibilities for designing DNA-based nanomaterials.

“This research is important for drug delivery, but also for fundamental structural biology and nanotechnology,” says McGill Chemistry professor Hanadi Sleiman, who led the research team. …

In their experiments, the McGill researchers first created DNA cubes using short DNA strands, and modified them with lipid-like molecules. The lipids can act like sticky patches that come together and engage in a “handshake” inside the DNA cube, creating a core that can hold cargo such as drug molecules.

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Biology is capable of evolving functional mechanical gears

Posted by Jim Lewis on October 16th, 2013

Credit: University of Cambridge

It has long been noted in discussions of atomically precise manufacturing that biological molecular machinery provides an existence proof for manufacturing complex molecular machinery. However, proposals for mature atomically precise manufacturing systems resemble scaled down conventional manufacturing systems, with gears and other rigid components familiar at the macroscale. In contrast biological molecular machine systems comprise floppy molecules interacting via controlled Brownian motion. Is it possible for evolution to develop machines with gears, etc.? Apparently evolution is capable of inventing mechanical gears, albeit at much larger than molecular scale. A hat tip to ScienceDaily for reprinting this news release from the University of Cambridge “Functioning ‘mechanical gears’ seen in nature for the first time“:

Previously believed to be only man-made, a natural example of a functioning gear mechanism has been discovered in a common insect – showing that evolution developed interlocking cogs long before we did.

The juvenile Issus – a plant-hopping insect found in gardens across Europe – has hind-leg joints with curved cog-like strips of opposing ‘teeth’ that intermesh, rotating like mechanical gears to synchronise the animal’s legs when it launches into a jump.

The finding demonstrates that gear mechanisms previously thought to be solely man-made have an evolutionary precedent. Scientists say this is the “first observation of mechanical gearing in a biological structure”.

Through a combination of anatomical analysis and high-speed video capture of normal Issus movements, scientists from the University of Cambridge have been able to reveal these functioning natural gears for the first time. The findings are reported in the latest issue of the journal Science [abstract].

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TEDx talk: "Transforming the Material Basis of Civilization"

Posted by Stephanie C on October 14th, 2013

Eric Drexler speaks at TEDx Lisbon

Eric Drexler’s TEDx talk entitled “A Future of Radical Abundance: Transforming the Material Basis of Civilization” is available for viewing on Youtube as well as on Drexler’s blog site.

As described by the Oxford Martin School, where Drexler is a scholar with the Programme on the Impacts of Future Technology:

Dr. Eric Drexler’s talk from TEDx IST Alameda (18 June 2013)

‘A Future of Radical Abundance: Transforming the Material Basis of Civilization’

What if an advanced production technology could enable us to transition to a global economy with zero carbon emissions, and then enable us to undertake the vast task of removing excess carbon from Earth’s atmosphere? What if we could learn to make a broad spectrum of products cleanly, at low cost, and on a global scale? If so, then prospects for the 21st century would be different from today’s expectations.

Eric Drexler’s recent TEDx talk in Lisbon describes the physical basis and historical context of a prospective revolution in the material basis of our civilization: high-throughput atomically precise manufacturing. The level of technology required is visible in the distance today—not close, yet accessible through a series of advances in nanotechnology and the molecular sciences. As global problems intensify, understanding this technological potential has become increasingly urgent. Eric’s TEDx talk surveys this topic and provides a framework for further discussion.

-Posted by Stephanie C

Carbyne: the strongest, stiffest carbon chain

Posted by Stephanie C on October 11th, 2013

Carbyne ropes and rods. Credit: Vasilii Artyukhov/Rice University

Carbyne – a straight line of carbon atoms linked by double bonds or by alternating single and triple bonds — is the next stiff, carbon-based structure with unusual and desirable properties. It has been observed under limited natural and experimental conditions, is expected to be difficult to synthesize and store, and now has been theoretically characterized.

Researchers at Rice University recently published DFT characterizations of carbyne ropes and rods, and overviews of the findings and prospects are reprinted at

According to the portrait drawn from calculations by Yakobson and his group:

  • Carbyne’s tensile strength – the ability to withstand stretching – surpasses “that of any other known material” and is double that of graphene. (Scientists had already calculated it would take an elephant on a pencil to break through a sheet of graphene.)
  • It has twice the tensile stiffness of graphene and carbon nanotubes and nearly three times that of diamond.
  • Stretching carbyne as little as 10 percent alters its electronic band gap significantly.
  • If outfitted with molecular handles at the ends, it can also be twisted to alter its band gap. With a 90-degree end-to-end rotation, it becomes a magnetic semiconductor.
  • Carbyne chains can take on side molecules that may make the chains suitable for energy storage.
  • The material is stable at room temperature, largely resisting crosslinks with nearby chains.

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Nanotubes aren't stiff if they aren't straight

Posted by Stephanie C on October 3rd, 2013

"This montage includes images of carbon nanotube forests. New research explains why the CNT forests have less stiffness than expected. (Credit: Images courtesy of Justin Chow)"

Materials scientists have pursued the question of why vertically aligned carbon nanotube forests show much lower modulus values than expected. Now researchers from Georgia Tech have found that the nanotubes they fabricate contain kinks that dramatically diminish modulus value. In other words, the nanotubes are not straight; therefore, they are not stiff.

The government-funded research was recently published in Carbon, and the first sentence of the Abstract reads, “Waviness is invariably present in vertically-aligned Carbon Nanotubes (CNTs) regardless of how controlled the fabrication process is.”  As described in the journal article, and in a reprinted news article at, the inescapably wavy nanotube forests afford possible heat management applications:

Carbon nanotubes provide many attractive properties, including high electrical and thermal conductivity, and high strength. Individual carbon nanotubes have a modulus ranging from 100 gigapascals to 1.5 terapascals. Arrays of vertically-aligned carbon nanotubes with a low density would be expected to a have an effective modulus of at least five to 150 gigapascals, Sitaraman said, but scientists have typically measured values that are four orders or magnitude less — between one and 10 megapascals.

To look for potential explanations, the researchers examined the carbon nanotubes using scanning electron microscopes located in Georgia Tech’s Institute for Electronics and Nanotechnology facilities. At magnification of 10,000 times, they saw the waviness in sections of the nanotubes.

“We found very tiny kinks in the carbon nanotubes,” said Sitaraman. “Although they appeared to be perfectly straight, there was waviness in them. The more waviness we saw, the lower their stiffness was.”
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Foresight Invitational Workshop: Nanotechnology for Developing Countries

Posted by Jim Lewis on September 30th, 2013

Nanotechnology for Developing Countries: the 2014 Foresight Invitational Workshop
February 7-9, 2014
Crowne Plaza Cabana Hotel, Palo Alto
Silicon Valley, California, USA


Nanoscale technologies have the potential to bring immense benefits to developing countries, in areas ranging from water and energy to health and environmental restoration. But the challenges are correspondingly large; required steps include:

• Identify nanotechnologies that can make a difference near-term
• Design and build products that will actually be useful
• Bring these to market at affordable price points
• Balance intellectual property interests
• Speed enterprises past the “Valley of Death”
• Solve support and maintenance issues
• Avoid solving problems that local economies are already handling well

It’s time to gather the major players to tackle these in an invitational workshop, held in the center of high-tech entrepreneurship: Silicon Valley. Researchers, product developers, IP specialists, funders, and those with experience tackling real-world problems in developing countries will come together to find ways to “fast track” nanotechnologies to make a positive difference.

Once candidate research advances, technologies, or products are identified, vigorous efforts will be made to connect innovators with funders having experience in nano-based products. Additionally, it is understood that developing country markets have special requirements and new companies will need targeted advice to succeed.

This meeting is being held in parallel with Foresight’s “Integration Conference” to enable us to take advantage of the technical expertise gathered there.

The goal is to keep this initial workshop relatively small to enable intense interaction. Those requesting an invitation should send an email to by October 16 with name and contact info.

We look forward to hearing from you soon!

John Allen
President, i-Nano LLC
Co-Chairman, Nanotechnology for Developing Countries

Paul Melnyk
Co-Chairman, Nanotechnology for Developing Countries
President, Foresight Institute

Christine Peterson
Co-Founder, Foresight Institute

Computational design of protein-small molecule interactions

Posted by Jim Lewis on September 26th, 2013

Digoxigenin, from the Wikimedia Commons

The modular molecular composite nanosystems (MMCNs) approach to developing atomically precise manufacturing, as described in the Technology Roadmap for Productive Nanosystems envisions million-atom-scale DNA frameworks with dense arrays of atomically precise binding sites for various functional components, with specially engineered proteins binding specific functional components to specific sites on the DNA frameworks. We have frequently highlighted here improvements in DNA nanotechnology to precisely position individual components, but until now a general purpose method to engineer proteins to bind specific small molecules has been elusive. A hat tip to for reprinting this University of Washington press release describing recent work from the laboratory of David Baker, who shared the 2004 Foresight Feynman Prize for Theoretical Nanotechnology. From “Pico-world dragnets: Computer-designed proteins recognize and bind small molecules“:

Computer-designed proteins that can recognize and interact with small biological molecules are now a reality. Scientists have succeeded in creating a protein molecule that can be programmed to unite with three different steroids.

The achievement could have far wider ranging applications in medicine and other fields, according to the Protein Design Institute at the University of Washington.

“This is major step toward building proteins for use as biosensors or molecular sponges, or in synthetic biology — giving organisms new tools to perform a task,” said one of the lead researchers, Christine E. Tinberg, a postdoctoral fellow in biochemistry at the UW.

The approach they took appears in the Sept. 4 online issue of Nature. Tinberg and Sagar D. Khare headed the study under the direction of David Baker, UW professor of biochemistry and Howard Hughes Medical Institute investigator. Khare is currently an assistant professor at Rutgers University.

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Building a hub for nanotech advancement

Posted by Stephanie C on September 17th, 2013

"An artist's rendering of what a possible computer chip manufacturing site might look like in Marcy." credit:

Nanotechnology draws from physics, chemistry, engineering, computation, etc., and this multi-disciplinary nature has served as a major speed bump in achievement of envisioned nanotech goals. There has been substantial concern that the U.S. is lagging behind other countries in nanotech R&D. Now researchers, companies, and politicians are coming together to create a much-needed physical hub for promoting and funding multi-disciplinary progress toward advanced technologies. The location: New York. The focus: chips.

Recently described at in an article entitled New York State: Building a Nano Empire :

For at least a decade, major nanotechnology players have been attracted by the intellectual center SUNY’s College of Nanoscale Science and Engineering has created in Albany. And now, Gov. Andrew Cuomo’s 2011 announcement of a $4.8 billion partnership with private companies — including Intel, Samsung, TSMC, IBM and Global Foundries — to develop the next generation of computer chip manufacturing is gaining traction.

“The biggest companies are behind it,” Singer said. “They really believe it will give them the competitive edge that will make it unbeatable, and they have the wherewithal to make it happen.”

And biotech is getting in on the action. Earlier this summer, SUNY CNSE announced a biotech partnership aimed at “nanotech-enabled cancer research”:

Albany, NY and Pittsfield, MA – Underscoring the strategic blueprint of Governor Andrew M. Cuomo in fueling New York’s growing reputation as a hub for nanotechnology-enabled innovation, SUNY’s College of Nanoscale Science and Engineering (CNSE) and Pittsfield, Massachusetts-based Nuclea Biotechnologies, Inc. (Nuclea) today announced the launch of a $1 million research partnership to enable the development and commercialization of a high-throughput nanochip to accelerate the diagnosis and treatment of breast, colon, prostate and other cancers.

“Driven by the vision and leadership of Governor Andrew Cuomo, New York is recognized as the leading global hub for nanotechnology education and innovation, including an expanding footprint in critical 21st century fields such as life sciences,” said Dr. Alain E. Kaloyeros, CNSE Senior Vice President and CEO. “This public-private partnership with Nuclea Biotechnologies expands CNSE’s cutting-edge research in the nanobioscience arena, and further illustrates its role in accelerating advanced technologies and attracting high-tech companies to New York.”

“This research agreement is a perfect marriage of biotechnology and nanotechnology,” said Patrick Muraca, President and CEO of Nuclea. “CNSE’s global reputation as the world leader in nanoscale engineering will lend critical expertise in developing the miniature version of our protein chip, which is an important element for us as we work toward commercialization. We’ve assembled a great team and look forward to this collaboration with CNSE.”

Chips, which are for the most part continuing on cycles of iterative miniaturization and are still on the millimeter (bulk) scale despite the use of the term ‘nanotechnology’, remain indisputably relevant to near-term advanced technologies. Do these NY-based efforts help restore the standing of the US in global nanotech R&D?
-Posted by Stephanie C

Circuits of graphitic nanoribbons grown from aligned DNA templates

Posted by Jim Lewis on September 17th, 2013

Representation of DNA Assembly of Graphene Transistor. To the right is a honeycomb of graphene atoms. To the left is a double strand of DNA. The white spheres represent copper ions integral to the chemical assembly process. The fire represents the heat that is an essential ingredient in the technique. (Credit: Anatoliy Sokolov of the Bao Group)

The “molecular threading” technique disclosed by Aeon Biowares that was the topic of our previous post was presented as a great improvement over earlier bulk methods for stretching DNA, such as “molecular combing”, and the researchers speculated that it might also be useful for fabricating arrays of nanowires. As a starting point to thinking about what molecular threading might make possible, it might be useful to consider what current methods like molecular combing can accomplish. A hat tip to Josh Hall for pointing to this example of what can already be done in terms of using DNA strands to assemble functional arrays “Stanford scientists use DNA to assemble a transistor from graphene“.

DNA is the blueprint for life. Could it also become the template for making a new generation of computer chips based not on silicon, but on an experimental material known as graphene?

That’s the theory behind a process that Stanford chemical engineering professor Zhenan Bao reveals in Nature Communications [abstract]. …

Graphene has the physical and electrical properties to become a next-generation semiconductor material – if researchers can figure out how to mass-produce it.

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Precise mechanical manipulation of individual long DNA molecules

Posted by Jim Lewis on September 12th, 2013

Electron micrographs demonstrating Aeon Biowares' patented Molecular Threading technology. Left: DNA molecules threaded onto an electron microscopy grid with an amorphous carbon surface; right: DNA molecules threaded onto a graphene coated grid (credit: Aeon Biowares and KurzweilAI)

Those Nanodot readers who heard very interesting research results from Halcyon Molecular discussed at the Foresight Institute 25th Anniversary Reunion Conference (see here and here and these videos) will be interested in this update on the “Molecular Threading” portion of that technology found on

Teams of researchers from Harvard University and Halcyon Molecular, Inc. have disclosed “Molecular Threading,” the first technology to allow single DNA molecules to be drawn from solution and precisely manipulated, allowing for faster, cheaper, more accurate DNA sequencing.

This novel technology pulls single high-molecular weight DNA molecules from solution into air and then places them onto any surface. Halcyon Molecular developed the processes and the intellectual property is now owned by Palo Alto-based biotechnology firm Aeon Biowares.

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THE SINGULARITY film premiere at The Castro Theatre 09.16.13

Posted by Jim Lewis on September 6th, 2013

THE SINGULARITY, a documentary directed by Doug Wolens

Just off special screenings at NASA and Yerba Buena Center for the Arts, Doug Wolens’s documentary THE SINGULARITY will premiere on the giant silver screen at San Francisco’s historic Castro Theatre. An awesome venue for the premiere of the most comprehensive and insightful documentary film about the singularity to date.

Within the coming decades we will be able to create computers with greater than human intelligence, bio-engineer our species and re-design matter through nanotechnology. How will these technologies change what it means to be human? Director Doug Wolens speaks with leading futurists, computer scientists, artificial intelligence experts, and philosophers who turn over the question like a Rubik’s Cube. Ultimately, if we become more machine-like, and machines more like us, will we sacrifice our humanity to gain something greater? Or will we engineer our own demise?

Q&A with filmmaker Doug Wolens to follow the screening.
Show times: 4pm and 8pm — 75 minutes

THE SINGULARITY will be shown together with Doug’s earlier films BUTTERFLY (2000) and WEED (1996)

Tickets now available through Brown Paper
Tickets: One ticket is good for all 3 films!

For more information go to:
Official event listing:
The Castro Theatre listing:
Facebook page:

Among those featured in this documentary well-known in the Foresight community are Ray Kurzweil, Christine Peterson, Ben Goertzel, Eliezer Yudkowsky, Aubrey De Grey, Ralph Merkle, Brad Templeton, and Chris Phoenix.

Conference video: Assembly and Manipulation of Molecules at the Atomic Scale

Posted by Jim Lewis on August 29th, 2013

Credit: Leonhard Grill

A select set of videos from the 2013 Foresight Technical Conference: Illuminating Atomic Precision, held January 11-13, 2013 in Palo Alto, have been made available on vimeo. Videos have been posted of those presentations for which the speakers have consented. Other presentations contained confidential information and will not be posted.

The second speaker at the Atomic Scale Devices session, the winner of the 2011 Feynman Prize for Experimental work, Leonhard Grill, presented his prize-winning work “Assembly and Manipulation of Molecules at the Atomic Scale: ‘Stiching and Switching’biography and abstract, – video length 27:43. He addressed two topics: (1) the manipulation of single molecules on surfaces to gain fundamental understanding of their function by triggering their function, which could be mechanical, optical, or electronic, directly on the surface; (2) how to build molecular architectures on a surface in a very controlled way with pre-defined topography using different kinds of interactions on the surface. The work he presented was done using a scanning tunneling microscope (STM) under high vacuum to keep things clean, and at the very low temperature of 5 K to minimize molecular movement. The first example illustrated a mechanical function, a rolling motion of a molecule on a surface. Previous demonstrations of lateral movement of a single molecule as a result of STM manipulation relied on getting the molecule to hop from one point on the surface to another. A molecular wheel made from a triptycene dimer was manipulated with the STM, causing the molecule to move across the surface. However, monitoring electric current through the tip in real time as the molecule moved, yielding a saw-tooth pattern, showed the motion to be hopping rather than rolling. So they changed the substrate from copper (100), which is very flat, to copper (110), which consists of atomic lines of copper atoms. Because of these corrugations on the surface, the molecular wheel was able to roll over the surface.

Read the rest of this entry »

Next Foresight Conference on Nanotechnology in February 2014

Posted by Jim Lewis on August 28th, 2013

17th Foresight Conference: ”The Integration Conference

February 7-9, 2014
Crowne Plaza Cabana Hotel, Palo Alto
Silicon Valley, California, USA

Over 20 speakers will present their research and vision within the realm of groundbreaking atomic- and molecular-scale science and engineering with application across a wide range of advanced technologies, including materials, electronics, energy conversion, biotechnology and more. Events will include presentation of the annual Foresight Institute Feynman Prize, one of the most prestigious awards in nanoscale science and technology.

Integration: The development and proliferation of nanotechnology through its applications in diverse fields are dependent upon the successful integration of nano-engineered devices and materials (“nanosystems”) into more complex micro- and macro-systems. Thus, this year the concept of Integration is highlighted, for the successful integration of nanosystems can impact the rate of development, application, and ultimately benefit.

Analysis, simulation, synthesis, and mass production are challenges for nanotechnology integration in such diverse applications as biotechnology, medicine, microelectronics, defense, energy conversion and storage, coatings, textiles, pharmaceuticals, cosmetics, and even food and food security.

Conference Co-Chairs
Robert P. Meagley, CEO/CTO, ONE Nanotechnologies
William A. Goddard III, Director, Materials and Process Simulation Center, Caltech

Planned Sessions include:

  • Analysis and Simulation
  • Bionano Systems
  • Commercially Implemented Nanotechnology
  • Electronic and Optical Nanosystems
  • Self-Organizing & Adaptive Systems

Look for further details on the conference, speakers, and events in the coming weeks and months. Registration will open in mid-September.

Warped graphene molecules offer new building blocks for nanotechnology

Posted by Jim Lewis on August 26th, 2013

Credit: Boston College

There has been a great deal of interest over the past few years in the properties of graphene, one-atom-thick sheets of trigonal carbon atoms. For the most part, the graphene sheets that have been studied are large on the molecular scale, irregular in their extent, and flat. Chemists have now synthesized distinct molecular species of grossly distorted graphene, somewhat more than one nanometer across, comprising 80 carbon atoms and 30 hydrogen atoms. A hat tip to KurzweilAI for highlighting this Boston College news release “Chemists at Boston College, Nagoya University Synthesize First Example of New Carbon Form“:

Chemists at Boston College and Nagoya University have together synthesized the first example of a new form of carbon, the team reports in the most recent edition of the journal Nature Chemistry [abstract]. This new material consists of many identical piece of grossly warped graphene, each containing exactly 80 carbon atoms joined together in a network of 26 rings, with 30 hydrogen atoms decorating the rim. These individual molecules, because they measure somewhat more than a nanometer across, are referred to generically as “nanocarbons,” or more specifically in this case as “grossly warped nanographenes.” …

Graphene sheets prefer planar, 2-dimensional geometries as a consequence of the hexagonal, chicken wire-like, arrangements of trigonal carbon atoms comprising their two-dimensional networks. The new form of carbon just reported in Nature Chemistry, however, is wildly distorted from planarity as a consequence of the presence of five 7-membered rings and one 5-membered ring embedded in the hexagonal lattice of carbon atoms.

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Illuminating Atomic Precision Conference videos

Posted by Jim Lewis on August 23rd, 2013

Credit: John Randall, Zyvex Labs

A select set of videos from the 2013 Foresight Technical Conference: Illuminating Atomic Precision, held January 11-13, 2013 in Palo Alto, have been made available on vimeo. Videos have been posted of those presentations for which the speakers have consented. Other presentations contained confidential information and will not be posted.

In his introductory comments, Conference Co-Chair Larry S. Millstein stressed that the five sessions of the Conference were designed to bring together five research communities that have until now not had close contacts, in the hope that their interactions would accelerate progress. Similarly, the Conference’s restrictive media policy was designed to accelerate progress by encouraging speakers to share with Conference participants unpublished research by assuring them that sharing these results would not interfere with their future publication. video length 3:49.

In his introductory comments, Conference Co-Chair J. Fraser Stoddart observed that for a quarter of a century nanotechnology has been bringing together physicists, chemists, biologists, material scientists, engineers, and computational people under the banner of “nano”. He referred to his own recent work as an example of the self-assembly of simple structures to produce emergent complex behavior, and expressed the desire that this assembly bringing together widely divergent scientific, technological and engineering perspectives would inspire new knowledge. video length 7:36.

John Randall introduced the session on Atomic Scale Devices and discussed work at Zyvex Labs on “Atomically Precise Manufacturing”. – video length 28:52. Randall made clear at the onset that by atomic precision, he is not talking about a precision of plus or minus one atom, but rather about absolute precision in manufacturing—no size variation. You put the atoms where you want them so everything is the same and matter can be dealt with as though it is digital. There is no accumulation of error and eventually materials can be defect free. He proposed that once absolute precision is achieved that the volume of material that could be produced cost effectively would increase exponentially, making an “educated guess” that using techniques that they are working on today, they will reach one cubic micrometer before 2020. He described the Atomically Precise Manufacturing Consortium and their commitment to bring atom-by-atom manufacturing tools to market. Their approach uses an STM to precisely remove individual hydrogen atoms from the surface of a passivated crystal, followed by atomic layer epitaxy to build three-dimensional structures with top-down control, “putting every atom where we want it.” Randall emphasized that the STM tip is not used to drag Si or H atoms around and into place; it is only used to image and for electron-stimulated desorption of passivated hydrogen atoms. Examples of products that might start this proposed exponential manufacturing trend include a nanometrology standard consisting of a wall of silicon a know number of atoms wide and a known number of atoms tall, NEMS resonators that operate in the terahertz regime, master templates for nanoimprinting, devices for quantum computing, and nanopores for ultra-high-speed DNA sequencing.
—James Lewis, PhD